Ontologies, Classifications, and Coding

Detecting Miscoded Diabetes Diagnosis Codes in Electronic Health Records for Quality Improvement: Temporal Deep Learning Approach

Sina Rashidian, Kayley Abell-Hart, Janos Hajagos, Richard Moffitt, Veena Lingam, Victor Garcia, Chao-Wei Tsai, Fusheng Wang, Xinyu Dong, Siao Sun, Jianyuan Deng, Rajarsi Gupta, Joshua Miller, Joel Saltz, Mary Saltz

JMIR Med Inform 2020 (Dec 17); 8(12):e22649

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Transformation of Pathology Reports Into the Common Data Model With Oncology Module: Use Case for Colon Cancer

Borim Ryu, Eunsil Yoon, Seok Kim, Sejoon Lee, Hyunyoung Baek, Soyoung Yi, Hee Young Na, Ji-Won Kim, Rong-Min Baek, Hee Hwang, Sooyoung Yoo

J Med Internet Res 2020 (Dec 09); 22(12):e18526

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Using Social Media Data to Understand Consumers' Information Needs and Emotions Regarding Cancer: Ontology-Based Data Analysis Study

Jooyun Lee, Hyeoun-Ae Park, Seul Ki Park, Tae-Min Song

J Med Internet Res 2020 (Dec 07); 22(12):e18767

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Automatic Structuring of Ontology Terms Based on Lexical Granularity and Machine Learning: Algorithm Development and Validation

Lingyun Luo, Jingtao Feng, Huijun Yu, Jiaolong Wang

JMIR Med Inform 2020 (Nov 25); 8(11):e22333

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Visualization Environment for Federated Knowledge Graphs: Development of an Interactive Biomedical Query Language and Web Application Interface

Steven Cox, Stanley C Ahalt, James Balhoff, Chris Bizon, Karamarie Fecho, Yaphet Kebede, Kenneth Morton, Alexander Tropsha, Patrick Wang, Hao Xu

JMIR Med Inform 2020 (Nov 23); 8(11):e17964

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COVID-19 Surveillance in a Primary Care Sentinel Network: In-Pandemic Development of an Application Ontology

Simon de Lusignan, Harshana Liyanage, Dylan McGagh, Bhautesh Dinesh Jani, Jorgen Bauwens, Rachel Byford, Dai Evans, Tom Fahey, Trisha Greenhalgh, Nicholas Jones, Frances S Mair, Cecilia Okusi, Vaishnavi Parimalanathan, Jill P Pell, Julian Sherlock, Oscar Tamburis, Manasa Tripathy, Filipa Ferreira, John Williams, F D Richard Hobbs

JMIR Public Health Surveill 2020 (Nov 17); 6(4):e21434

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Characterizing Chronic Pain Episodes in Clinical Text at Two Health Care Systems: Comprehensive Annotation and Corpus Analysis

Luke A Carlson, Molly M Jeffery, Sunyang Fu, Huan He, Rozalina G McCoy, Yanshan Wang, William Michael Hooten, Jennifer St Sauver, Hongfang Liu, Jungwei Fan

JMIR Med Inform 2020 (Nov 16); 8(11):e18659

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An Environmental Scan of Sex and Gender in Electronic Health Records: Analysis of Public Information Sources

Francis Lau, Marcy Antonio, Kelly Davison, Roz Queen, Katie Bryski

J Med Internet Res 2020 (Nov 11); 22(11):e20050

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Building a Pharmacogenomics Knowledge Model Toward Precision Medicine: Case Study in Melanoma

Hongyu Kang, Jiao Li, Meng Wu, Liu Shen, Li Hou

JMIR Med Inform 2020 (Oct 21); 8(10):e20291

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Coding Systems for Clinical Decision Support: Theoretical and Real-World Comparative Analysis

Nicolas Delvaux, Bert Vaes, Bert Aertgeerts, Stijn Van de Velde, Robert Vander Stichele, Peter Nyberg, Mieke Vermandere

JMIR Form Res 2020 (Oct 21); 4(10):e16094

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Phenotypically Similar Rare Disease Identification from an Integrative Knowledge Graph for Data Harmonization: Preliminary Study

Qian Zhu, Dac-Trung Nguyen, Gioconda Alyea, Karen Hanson, Eric Sid, Anne Pariser

JMIR Med Inform 2020 (Oct 02); 8(10):e18395

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Chinese Clinical Named Entity Recognition in Electronic Medical Records: Development of a Lattice Long Short-Term Memory Model With Contextualized Character Representations

Yongbin Li, Xiaohua Wang, Linhu Hui, Liping Zou, Hongjin Li, Luo Xu, Weihai Liu

JMIR Med Inform 2020 (Sep 04); 8(9):e19848

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Social Media Text Mining Framework for Drug Abuse: Development and Validation Study With an Opioid Crisis Case Analysis

Tareq Nasralah, Omar El-Gayar, Yong Wang

J Med Internet Res 2020 (Aug 13); 22(8):e18350

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Occupation Coding of Job Titles: Iterative Development of an Automated Coding Algorithm for the Canadian National Occupation Classification (ACA-NOC)

Hongchang Bao, Christopher J O Baker, Anil Adisesh

JMIR Form Res 2020 (Aug 05); 4(8):e16422

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Temporal Expression Classification and Normalization From Chinese Narrative Clinical Texts: Pattern Learning Approach

Xiaoyi Pan, Boyu Chen, Heng Weng, Yongyi Gong, Yingying Qu

JMIR Med Inform 2020 (Jul 27); 8(7):e17652

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Embedding “Smart” Disease Coding Within Routine Electronic Medical Record Workflow: Prospective Single-Arm Trial

Dee Mangin, Jennifer Lawson, Krzysztof Adamczyk, Dale Guenter

JMIR Med Inform 2020 (Jul 27); 8(7):e16764

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Ontological Organization and Bioinformatic Analysis of Adverse Drug Reactions From Package Inserts: Development and Usability Study

Xiaoying Li, Xin Lin, Huiling Ren, Jinjing Guo

J Med Internet Res 2020 (Jul 20); 22(7):e20443

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Information Loss in Harmonizing Granular Race and Ethnicity Data: Descriptive Study of Standards

Karen Wang, Holly Grossetta Nardini, Lori Post, Todd Edwards, Marcella Nunez-Smith, Cynthia Brandt

J Med Internet Res 2020 (Jul 20); 22(7):e14591

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Prediction of Medical Concepts in Electronic Health Records: Similar Patient Analysis

Nhat Le, Matthew Wiley, Antonio Loza, Vagelis Hristidis, Robert El-Kareh

JMIR Med Inform 2020 (Jul 17); 8(7):e16008

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Data Integration in the Brazilian Public Health System for Tuberculosis: Use of the Semantic Web to Establish Interoperability

Felipe Carvalho Pellison, Rui Pedro Charters Lopes Rijo, Vinicius Costa Lima, Nathalia Yukie Crepaldi, Filipe Andrade Bernardi, Rafael Mello Galliez, Afrânio Kritski, Kumar Abhishek, Domingos Alves

JMIR Med Inform 2020 (Jul 06); 8(7):e17176

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