Ontologies, Classifications, and Coding

The Journey of Data Within a Global Data Sharing Initiative: A Federated 3-Layer Data Analysis Pipeline to Scale Up Multiple Sclerosis Research

Ashkan Pirmani, Edward De Brouwer, Lotte Geys, Tina Parciak, Yves Moreau, Liesbet M Peeters

JMIR Med Inform 2023 (Nov 09); 11:e48030

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Assessing the Use of German Claims Data Vocabularies for Research in the Observational Medical Outcomes Partnership Common Data Model: Development and Evaluation Study

Elisa Henke, Michéle Zoch, Michael Kallfelz, Thomas Ruhnke, Liz Annika Leutner, Melissa Spoden, Christian Günster, Martin Sedlmayr, Franziska Bathelt

JMIR Med Inform 2023 (Nov 07); 11:e47959

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ChatGPT-Generated Differential Diagnosis Lists for Complex Case–Derived Clinical Vignettes: Diagnostic Accuracy Evaluation

Takanobu Hirosawa, Ren Kawamura, Yukinori Harada, Kazuya Mizuta, Kazuki Tokumasu, Yuki Kaji, Tomoharu Suzuki, Taro Shimizu

JMIR Med Inform 2023 (Oct 09); 11:e48808

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A Multilabel Text Classifier of Cancer Literature at the Publication Level: Methods Study of Medical Text Classification

Ying Zhang, Xiaoying Li, Yi Liu, Aihua Li, Xuemei Yang, Xiaoli Tang

JMIR Med Inform 2023 (Oct 05); 11:e44892

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A Natural Language Processing Model for COVID-19 Detection Based on Dutch General Practice Electronic Health Records by Using Bidirectional Encoder Representations From Transformers: Development and Validation Study

Maarten Homburg, Eline Meijer, Matthijs Berends, Thijmen Kupers, Tim Olde Hartman, Jean Muris, Evelien de Schepper, Premysl Velek, Jeroen Kuiper, Marjolein Berger, Lilian Peters

J Med Internet Res 2023 (Oct 04); 25:e49944

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Web-Based Application Based on Human-in-the-Loop Deep Learning for Deidentifying Free-Text Data in Electronic Medical Records: Development and Usability Study

Leibo Liu, Oscar Perez-Concha, Anthony Nguyen, Vicki Bennett, Victoria Blake, Blanca Gallego, Louisa Jorm

Interact J Med Res 2023 (Aug 25); 12:e46322

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Machine Learning–Enabled Clinical Information Systems Using Fast Healthcare Interoperability Resources Data Standards: Scoping Review

Jeremy A Balch, Matthew M Ruppert, Tyler J Loftus, Ziyuan Guan, Yuanfang Ren, Gilbert R Upchurch, Tezcan Ozrazgat-Baslanti, Parisa Rashidi, Azra Bihorac

JMIR Med Inform 2023 (Aug 24); 11:e48297

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Comprehensive Ontology of Fibroproliferative Diseases: Protocol for a Semantic Technology Study

Marcin Golec, Maulik Kamdar, Sandra Barteit

JMIR Res Protoc 2023 (Aug 11); 12:e48645

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Identifying Risk Factors Associated With Lower Back Pain in Electronic Medical Record Free Text: Deep Learning Approach Using Clinical Note Annotations

Alan Katz, Aman Jaiswal, Marcello Nesca, Evangelos Milios

JMIR Med Inform 2023 (Aug 09); 11:e45105

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Methods Used in the Development of Common Data Models for Health Data: Scoping Review

Najia Ahmadi, Michele Zoch, Patricia Kelbert, Richard Noll, Jannik Schaaf, Markus Wolfien, Martin Sedlmayr

JMIR Med Inform 2023 (Aug 03); 11:e45116

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Evaluating the Applicability of Existing Lexicon-Based Sentiment Analysis Techniques on Family Medicine Resident Feedback Field Notes: Retrospective Cohort Study

Kevin Jia Qi Lu, Christopher Meaney, Elaine Guo, Fok-Han Leung

JMIR Med Educ 2023 (Jul 27); 9:e41953

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An Ontology-Based Approach to Improving Medication Appropriateness in Older Patients: Algorithm Development and Validation Study

Elena Calvo-Cidoncha, Julián Verdinelli, Javier González-Bueno, Alfonso López-Soto, Concepción Camacho Hernando, Xavier Pastor-Duran, Carles Codina-Jané, Raimundo Lozano-Rubí

JMIR Med Inform 2023 (Jul 10); 11:e45850

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Transferability Based on Drug Structure Similarity in the Automatic Classification of Noncompliant Drug Use on Social Media: Natural Language Processing Approach

Tomohiro Nishiyama, Shuntaro Yada, Shoko Wakamiya, Satoko Hori, Eiji Aramaki

J Med Internet Res 2023 (May 03); 25:e44870

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Supervised Relation Extraction Between Suicide-Related Entities and Drugs: Development and Usability Study of an Annotated PubMed Corpus

Karina Karapetian, Soo Min Jeon, Jin-Won Kwon, Young-Kyoon Suh

J Med Internet Res 2023 (Mar 08); 25:e41100

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Extracting Medical Information From Free-Text and Unstructured Patient-Generated Health Data Using Natural Language Processing Methods: Feasibility Study With Real-world Data

Emre Sezgin, Syed-Amad Hussain, Steve Rust, Yungui Huang

JMIR Form Res 2023 (Mar 07); 7:e43014

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German Medical Named Entity Recognition Model and Data Set Creation Using Machine Translation and Word Alignment: Algorithm Development and Validation

Johann Frei, Frank Kramer

JMIR Form Res 2023 (Feb 28); 7:e39077

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A Comprehensive and Improved Definition for Hospital-Acquired Pressure Injury Classification Based on Electronic Health Records: Comparative Study

Mani Sotoodeh, Wenhui Zhang, Roy L Simpson, Vicki Stover Hertzberg, Joyce C Ho

JMIR Med Inform 2023 (Feb 23); 11:e40672

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Pregex: Rule-Based Detection and Extraction of Twitter Data in Pregnancy

Ari Z Klein, Shriya Kunatharaju, Karen O'Connor, Graciela Gonzalez-Hernandez

J Med Internet Res 2023 (Feb 09); 25:e40569

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Systematized Nomenclature of Medicine–Clinical Terminology (SNOMED CT) Clinical Use Cases in the Context of Electronic Health Record Systems: Systematic Literature Review

Riikka Vuokko, Anne Vakkuri, Sari Palojoki

JMIR Med Inform 2023 (Feb 06); 11:e43750

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A Linked Open Data–Based Terminology to Describe Libre/Free and Open-source Software: Incremental Development Study

Franziska Jahn, Elske Ammenwerth, Verena Dornauer, Konrad Höffner, Michelle Bindel, Thomas Karopka, Alfred Winter

JMIR Med Inform 2023 (Jan 20); 11:e38861

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