Ontologies, Classifications, and Coding

Deciphering the Diversity of Mental Models in Neurodevelopmental Disorders: Knowledge Graph Representation of Public Data Using Natural Language Processing

Manpreet Kaur, Jeremy Costello, Elyse Willis, Karen Kelm, Marek Z Reformat, Francois V Bolduc

J Med Internet Res 2022 (Aug 05); 24(8):e39888

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A Syntactic Information–Based Classification Model for Medical Literature: Algorithm Development and Validation Study

Wentai Tang, Jian Wang, Hongfei Lin, Di Zhao, Bo Xu, Yijia Zhang, Zhihao Yang

JMIR Med Inform 2022 (Aug 02); 10(8):e37817

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A Personalized Ontology-Based Decision Support System for Complex Chronic Patients: Retrospective Observational Study

Esther Román-Villarán, Celia Alvarez-Romero, Alicia Martínez-García, German Antonio Escobar-Rodríguez, María José García-Lozano, Bosco Barón-Franco, Lourdes Moreno-Gaviño, Jesús Moreno-Conde, José Antonio Rivas-González, Carlos Luis Parra-Calderón

JMIR Form Res 2022 (Aug 02); 6(8):e27990

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Harnessing the Electronic Health Care Record to Optimize Patient Safety in Primary Care: Framework for Evaluating e–Safety-Netting Tools

Georgia Bell Black, Afsana Bhuiya, Claire Friedemann Smith, Yasemin Hirst, Brian David Nicholson

JMIR Med Inform 2022 (Aug 01); 10(8):e35726

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Automatic International Classification of Diseases Coding System: Deep Contextualized Language Model With Rule-Based Approaches

Pei-Fu Chen, Kuan-Chih Chen, Wei-Chih Liao, Feipei Lai, Tai-Liang He, Sheng-Che Lin, Wei-Jen Chen, Chi-Yu Yang, Yu-Cheng Lin, I-Chang Tsai, Chi-Hao Chiu, Shu-Chih Chang, Fang-Ming Hung

JMIR Med Inform 2022 (Jun 29); 10(6):e37557

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Personalized Recommendations for Physical Activity e-Coaching (OntoRecoModel): Ontological Modeling

Ayan Chatterjee, Andreas Prinz

JMIR Med Inform 2022 (Jun 23); 10(6):e33847

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Differential Expression of Long Noncoding RNAs in Murine Myoblasts After Short Hairpin RNA-Mediated Dysferlin Silencing In Vitro: Microarray Profiling

Richa Singhal, Rachel Lukose, Gwenyth Carr, Afsoon Moktar, Ana Lucia Gonzales-Urday, Eric C Rouchka, Bathri N Vajravelu

JMIR Bioinform Biotech 2022 (Jun 17); 3(1):e33186

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Deep Phenotyping of Chinese Electronic Health Records by Recognizing Linguistic Patterns of Phenotypic Narratives With a Sequence Motif Discovery Tool: Algorithm Development and Validation

Shicheng Li, Lizong Deng, Xu Zhang, Luming Chen, Tao Yang, Yifan Qi, Taijiao Jiang

J Med Internet Res 2022 (Jun 03); 24(6):e37213

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The Architecture of a Feasibility Query Portal for Distributed COVID-19 Fast Healthcare Interoperability Resources (FHIR) Patient Data Repositories: Design and Implementation Study

Julian Gruendner, Noemi Deppenwiese, Michael Folz, Thomas Köhler, Björn Kroll, Hans-Ulrich Prokosch, Lorenz Rosenau, Mathias Rühle, Marc-Anton Scheidl, Christina Schüttler, Brita Sedlmayr, Alexander Twrdik, Alexander Kiel, Raphael W Majeed

JMIR Med Inform 2022 (May 25); 10(5):e36709

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Domain-Specific Common Data Elements for Rare Disease Registration: Conceptual Approach of a European Joint Initiative Toward Semantic Interoperability in Rare Disease Research

Haitham Abaza, Dennis Kadioglu, Simona Martin, Andri Papadopoulou, Bruna dos Santos Vieira, Franz Schaefer, Holger Storf

JMIR Med Inform 2022 (May 20); 10(5):e32158

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Generation of a Fast Healthcare Interoperability Resources (FHIR)-based Ontology for Federated Feasibility Queries in the Context of COVID-19: Feasibility Study

Lorenz Rosenau, Raphael W Majeed, Josef Ingenerf, Alexander Kiel, Björn Kroll, Thomas Köhler, Hans-Ulrich Prokosch, Julian Gruendner

JMIR Med Inform 2022 (Apr 27); 10(4):e35789

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Multi-Label Classification in Patient-Doctor Dialogues With the RoBERTa-WWM-ext + CNN (Robustly Optimized Bidirectional Encoder Representations From Transformers Pretraining Approach With Whole Word Masking Extended Combining a Convolutional Neural Network) Model: Named Entity Study

Yuanyuan Sun, Dongping Gao, Xifeng Shen, Meiting Li, Jiale Nan, Weining Zhang

JMIR Med Inform 2022 (Apr 21); 10(4):e35606

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Natural Language Processing for Assessing Quality Indicators in Free-Text Colonoscopy and Pathology Reports: Development and Usability Study

Jung Ho Bae, Hyun Wook Han, Sun Young Yang, Gyuseon Song, Soonok Sa, Goh Eun Chung, Ji Yeon Seo, Eun Hyo Jin, Heecheon Kim, DongUk An

JMIR Med Inform 2022 (Apr 15); 10(4):e35257

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Neural Translation and Automated Recognition of ICD-10 Medical Entities From Natural Language: Model Development and Performance Assessment

Louis Falissard, Claire Morgand, Walid Ghosn, Claire Imbaud, Karim Bounebache, Grégoire Rey

JMIR Med Inform 2022 (Apr 11); 10(4):e26353

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A Traditional Chinese Medicine Syndrome Classification Model Based on Cross-Feature Generation by Convolution Neural Network: Model Development and Validation

Zonghai Huang, Jiaqing Miao, Ju Chen, Yanmei Zhong, Simin Yang, Yiyi Ma, Chuanbiao Wen

JMIR Med Inform 2022 (Apr 06); 10(4):e29290

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A Question-and-Answer System to Extract Data From Free-Text Oncological Pathology Reports (CancerBERT Network): Development Study

Joseph Ross Mitchell, Phillip Szepietowski, Rachel Howard, Phillip Reisman, Jennie D Jones, Patricia Lewis, Brooke L Fridley, Dana E Rollison

J Med Internet Res 2022 (Mar 23); 24(3):e27210

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Concept Libraries for Repeatable and Reusable Research: Qualitative Study Exploring the Needs of Users

Zahra Almowil, Shang-Ming Zhou, Sinead Brophy, Jodie Croxall

JMIR Hum Factors 2022 (Mar 15); 9(1):e31021

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Patient-Level Fall Risk Prediction Using the Observational Medical Outcomes Partnership’s Common Data Model: Pilot Feasibility Study

Hyesil Jung, Sooyoung Yoo, Seok Kim, Eunjeong Heo, Borham Kim, Ho-Young Lee, Hee Hwang

JMIR Med Inform 2022 (Mar 11); 10(3):e35104

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Age- and Sex-Specific Differences in Multimorbidity Patterns and Temporal Trends on Assessing Hospital Discharge Records in Southwest China: Network-Based Study

Liya Wang, Hang Qiu, Li Luo, Li Zhou

J Med Internet Res 2022 (Feb 25); 24(2):e27146

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Identification of Prediabetes Discussions in Unstructured Clinical Documentation: Validation of a Natural Language Processing Algorithm

Jessica L Schwartz, Eva Tseng, Nisa M Maruthur, Masoud Rouhizadeh

JMIR Med Inform 2022 (Feb 24); 10(2):e29803

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