Ontologies, Classifications, and Coding

Domain-Specific Common Data Elements for Rare Disease Registration: Conceptual Approach of a European Joint Initiative Toward Semantic Interoperability in Rare Disease Research

Haitham Abaza, Dennis Kadioglu, Simona Martin, Andri Papadopoulou, Bruna dos Santos Vieira, Franz Schaefer, Holger Storf

JMIR Med Inform 2022 (May 20); 10(5):e32158

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Generation of a Fast Healthcare Interoperability Resources (FHIR)-based Ontology for Federated Feasibility Queries in the Context of COVID-19: Feasibility Study

Lorenz Rosenau, Raphael W Majeed, Josef Ingenerf, Alexander Kiel, Björn Kroll, Thomas Köhler, Hans-Ulrich Prokosch, Julian Gruendner

JMIR Med Inform 2022 (Apr 27); 10(4):e35789

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Multi-Label Classification in Patient-Doctor Dialogues With the RoBERTa-WWM-ext + CNN (Robustly Optimized Bidirectional Encoder Representations From Transformers Pretraining Approach With Whole Word Masking Extended Combining a Convolutional Neural Network) Model: Named Entity Study

Yuanyuan Sun, Dongping Gao, Xifeng Shen, Meiting Li, Jiale Nan, Weining Zhang

JMIR Med Inform 2022 (Apr 21); 10(4):e35606

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Natural Language Processing for Assessing Quality Indicators in Free-Text Colonoscopy and Pathology Reports: Development and Usability Study

Jung Ho Bae, Hyun Wook Han, Sun Young Yang, Gyuseon Song, Soonok Sa, Goh Eun Chung, Ji Yeon Seo, Eun Hyo Jin, Heecheon Kim, DongUk An

JMIR Med Inform 2022 (Apr 15); 10(4):e35257

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Neural Translation and Automated Recognition of ICD-10 Medical Entities From Natural Language: Model Development and Performance Assessment

Louis Falissard, Claire Morgand, Walid Ghosn, Claire Imbaud, Karim Bounebache, Grégoire Rey

JMIR Med Inform 2022 (Apr 11); 10(4):e26353

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A Traditional Chinese Medicine Syndrome Classification Model Based on Cross-Feature Generation by Convolution Neural Network: Model Development and Validation

Zonghai Huang, Jiaqing Miao, Ju Chen, Yanmei Zhong, Simin Yang, Yiyi Ma, Chuanbiao Wen

JMIR Med Inform 2022 (Apr 06); 10(4):e29290

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A Question-and-Answer System to Extract Data From Free-Text Oncological Pathology Reports (CancerBERT Network): Development Study

Joseph Ross Mitchell, Phillip Szepietowski, Rachel Howard, Phillip Reisman, Jennie D Jones, Patricia Lewis, Brooke L Fridley, Dana E Rollison

J Med Internet Res 2022 (Mar 23); 24(3):e27210

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Concept Libraries for Repeatable and Reusable Research: Qualitative Study Exploring the Needs of Users

Zahra Almowil, Shang-Ming Zhou, Sinead Brophy, Jodie Croxall

JMIR Hum Factors 2022 (Mar 15); 9(1):e31021

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Patient-Level Fall Risk Prediction Using the Observational Medical Outcomes Partnership’s Common Data Model: Pilot Feasibility Study

Hyesil Jung, Sooyoung Yoo, Seok Kim, Eunjeong Heo, Borham Kim, Ho-Young Lee, Hee Hwang

JMIR Med Inform 2022 (Mar 11); 10(3):e35104

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Age- and Sex-Specific Differences in Multimorbidity Patterns and Temporal Trends on Assessing Hospital Discharge Records in Southwest China: Network-Based Study

Liya Wang, Hang Qiu, Li Luo, Li Zhou

J Med Internet Res 2022 (Feb 25); 24(2):e27146

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Identification of Prediabetes Discussions in Unstructured Clinical Documentation: Validation of a Natural Language Processing Algorithm

Jessica L Schwartz, Eva Tseng, Nisa M Maruthur, Masoud Rouhizadeh

JMIR Med Inform 2022 (Feb 24); 10(2):e29803

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Development of a Pipeline for Adverse Drug Reaction Identification in Clinical Notes: Word Embedding Models and String Matching

Klaske R Siegersma, Maxime Evers, Sophie H Bots, Floor Groepenhoff, Yolande Appelman, Leonard Hofstra, Igor I Tulevski, G Aernout Somsen, Hester M den Ruijter, Marco Spruit, N Charlotte Onland-Moret

JMIR Med Inform 2022 (Jan 25); 10(1):e31063

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Improving Diabetes-Related Biomedical Literature Exploration in the Clinical Decision-making Process via Interactive Classification and Topic Discovery: Methodology Development Study

Adrian Ahne, Guy Fagherazzi, Xavier Tannier, Thomas Czernichow, Francisco Orchard

J Med Internet Res 2022 (Jan 18); 24(1):e27434

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Understanding the Nature of Metadata: Systematic Review

Hannes Ulrich, Ann-Kristin Kock-Schoppenhauer, Noemi Deppenwiese, Robert Gött, Jori Kern, Martin Lablans, Raphael W Majeed, Mark R Stöhr, Jürgen Stausberg, Julian Varghese, Martin Dugas, Josef Ingenerf

J Med Internet Res 2022 (Jan 11); 24(1):e25440

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Enabling Research and Clinical Use of Patient-Generated Health Data (the mindLAMP Platform): Digital Phenotyping Study

Aditya Vaidyam, John Halamka, John Torous

JMIR Mhealth Uhealth 2022 (Jan 07); 10(1):e30557

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Benchmarking Effectiveness and Efficiency of Deep Learning Models for Semantic Textual Similarity in the Clinical Domain: Validation Study

Qingyu Chen, Alex Rankine, Yifan Peng, Elaheh Aghaarabi, Zhiyong Lu

JMIR Med Inform 2021 (Dec 30); 9(12):e27386

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Text Mining of Adverse Events in Clinical Trials: Deep Learning Approach

Daphne Chopard, Matthias S Treder, Padraig Corcoran, Nagheen Ahmed, Claire Johnson, Monica Busse, Irena Spasic

JMIR Med Inform 2021 (Dec 24); 9(12):e28632

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Transformation and Evaluation of the MIMIC Database in the OMOP Common Data Model: Development and Usability Study

Nicolas Paris, Antoine Lamer, Adrien Parrot

JMIR Med Inform 2021 (Dec 14); 9(12):e30970

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Leveraging National Claims and Hospital Big Data: Cohort Study on a Statin-Drug Interaction Use Case

Aurélie Bannay, Mathilde Bories, Pascal Le Corre, Christine Riou, Pierre Lemordant, Pascal Van Hille, Emmanuel Chazard, Xavier Dode, Marc Cuggia, Guillaume Bouzillé

JMIR Med Inform 2021 (Dec 13); 9(12):e29286

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The Utility of Different Data Standards to Document Adverse Drug Event Symptoms and Diagnoses: Mixed Methods Study

Erina Chan, Serena S Small, Maeve E Wickham, Vicki Cheng, Ellen Balka, Corinne M Hohl

J Med Internet Res 2021 (Dec 10); 23(12):e27188

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