Ontologies, Classifications, and Coding

A Novel Metric to Quantify the Effect of Pathway Enrichment Evaluation With Respect to Biomedical Text-Mined Terms: Development and Feasibility Study

Xuan Qin, Xinzhi Yao, Jingbo Xia

JMIR Med Inform 2021 (Jun 18); 9(6):e28247

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Constructing High-Fidelity Phenotype Knowledge Graphs for Infectious Diseases With a Fine-Grained Semantic Information Model: Development and Usability Study

Lizong Deng, Luming Chen, Tao Yang, Mi Liu, Shicheng Li, Taijiao Jiang

J Med Internet Res 2021 (Jun 15); 23(6):e26892

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A Determinants-of-Fertility Ontology for Detecting Future Signals of Fertility Issues From Social Media Data: Development of an Ontology

Ji-Hyun Lee, Hyeoun-Ae Park, Tae-Min Song

J Med Internet Res 2021 (Jun 14); 23(6):e25028

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Extraction of Traditional Chinese Medicine Entity: Design of a Novel Span-Level Named Entity Recognition Method With Distant Supervision

Qi Jia, Dezheng Zhang, Haifeng Xu, Yonghong Xie

JMIR Med Inform 2021 (Jun 14); 9(6):e28219

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Implementing Vertical Federated Learning Using Autoencoders: Practical Application, Generalizability, and Utility Study

Dongchul Cha, MinDong Sung, Yu-Rang Park

JMIR Med Inform 2021 (Jun 09); 9(6):e26598

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A Care Knowledge Management System Based on an Ontological Model of Caring for People With Dementia: Knowledge Representation and Development Study

Gyungha Kim, Hwawoo Jeon, Sung Kee Park, Yong Suk Choi, Yoonseob Lim

J Med Internet Res 2021 (Jun 08); 23(6):e25968

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An Attention Model With Transfer Embeddings to Classify Pneumonia-Related Bilingual Imaging Reports: Algorithm Development and Validation

Hyung Park, Min Song, Eun Byul Lee, Bo Kyung Seo, Chang Min Choi

JMIR Med Inform 2021 (May 17); 9(5):e24803

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Pathway-Driven Coordinated Telehealth System for Management of Patients With Single or Multiple Chronic Diseases in China: System Development and Retrospective Study

Zheyu Wang, Jiye An, Hui Lin, Jiaqiang Zhou, Fang Liu, Juan Chen, Huilong Duan, Ning Deng

JMIR Med Inform 2021 (May 17); 9(5):e27228

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Learning From Clinical Consensus Diagnosis in India to Facilitate Automatic Classification of Dementia: Machine Learning Study

Haomiao Jin, Sandy Chien, Erik Meijer, Pranali Khobragade, Jinkook Lee

JMIR Ment Health 2021 (May 10); 8(5):e27113

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Extracting Drug Names and Associated Attributes From Discharge Summaries: Text Mining Study

Ghada Alfattni, Maksim Belousov, Niels Peek, Goran Nenadic

JMIR Med Inform 2021 (May 05); 9(5):e24678

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An Automatic Ontology-Based Approach to Support Logical Representation of Observable and Measurable Data for Healthy Lifestyle Management: Proof-of-Concept Study

Ayan Chatterjee, Andreas Prinz, Martin Gerdes, Santiago Martinez

J Med Internet Res 2021 (Apr 09); 23(4):e24656

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A Framework (SOCRATex) for Hierarchical Annotation of Unstructured Electronic Health Records and Integration Into a Standardized Medical Database: Development and Usability Study

Jimyung Park, Seng Chan You, Eugene Jeong, Chunhua Weng, Dongsu Park, Jin Roh, Dong Yun Lee, Jae Youn Cheong, Jin Wook Choi, Mira Kang, Rae Woong Park

JMIR Med Inform 2021 (Mar 30); 9(3):e23983

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Natural Language Processing of Clinical Notes to Identify Mental Illness and Substance Use Among People Living with HIV: Retrospective Cohort Study

Jessica P Ridgway, Arno Uvin, Jessica Schmitt, Tomasz Oliwa, Ellen Almirol, Samantha Devlin, John Schneider

JMIR Med Inform 2021 (Mar 10); 9(3):e23456

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Contribution of Free-Text Comments to the Burden of Documentation: Assessment and Analysis of Vital Sign Comments in Flowsheets

Zhijun Yin, Yongtai Liu, Allison B McCoy, Bradley A Malin, Patricia R Sengstack

J Med Internet Res 2021 (Mar 04); 23(3):e22806

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Lexicon Development for COVID-19-related Concepts Using Open-source Word Embedding Sources: An Intrinsic and Extrinsic Evaluation

Soham Parikh, Anahita Davoudi, Shun Yu, Carolina Giraldo, Emily Schriver, Danielle Mowery

JMIR Med Inform 2021 (Feb 22); 9(2):e21679

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Similarity-Based Unsupervised Spelling Correction Using BioWordVec: Development and Usability Study of Bacterial Culture and Antimicrobial Susceptibility Reports

Taehyeong Kim, Sung Won Han, Minji Kang, Se Ha Lee, Jong-Ho Kim, Hyung Joon Joo, Jang Wook Sohn

JMIR Med Inform 2021 (Feb 22); 9(2):e25530

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Disease Concept-Embedding Based on the Self-Supervised Method for Medical Information Extraction from Electronic Health Records and Disease Retrieval: Algorithm Development and Validation Study

Yen-Pin Chen, Yuan-Hsun Lo, Feipei Lai, Chien-Hua Huang

J Med Internet Res 2021 (Jan 27); 23(1):e25113

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Use of the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) for Processing Free Text in Health Care: Systematic Scoping Review

Christophe Gaudet-Blavignac, Vasiliki Foufi, Mina Bjelogrlic, Christian Lovis

J Med Internet Res 2021 (Jan 26); 23(1):e24594

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Clinical Term Normalization Using Learned Edit Patterns and Subconcept Matching: System Development and Evaluation

Rohit J Kate

JMIR Med Inform 2021 (Jan 14); 9(1):e23104

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Detecting Miscoded Diabetes Diagnosis Codes in Electronic Health Records for Quality Improvement: Temporal Deep Learning Approach

Sina Rashidian, Kayley Abell-Hart, Janos Hajagos, Richard Moffitt, Veena Lingam, Victor Garcia, Chao-Wei Tsai, Fusheng Wang, Xinyu Dong, Siao Sun, Jianyuan Deng, Rajarsi Gupta, Joshua Miller, Joel Saltz, Mary Saltz

JMIR Med Inform 2020 (Dec 17); 8(12):e22649

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