Ontologies, Classifications, and Coding

A Linked Open Data–Based Terminology to Describe Libre/Free and Open-source Software: Incremental Development Study

Franziska Jahn, Elske Ammenwerth, Verena Dornauer, Konrad Höffner, Michelle Bindel, Thomas Karopka, Alfred Winter

JMIR Med Inform 2023;11:e38861

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Ontologies Applied in Clinical Decision Support System Rules: Systematic Review

Xia Jing, Hua Min, Yang Gong, Paul Biondich, David Robinson, Timothy Law, Christian Nohr, Arild Faxvaag, Lior Rennert, Nina Hubig, Ronald Gimbel

JMIR Med Inform 2023;11:e43053

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Drug Abuse Ontology to Harness Web-Based Data for Substance Use Epidemiology Research: Ontology Development Study

Usha Lokala, Francois Lamy, Raminta Daniulaityte, Manas Gaur, Amelie Gyrard, Krishnaprasad Thirunarayan, Ugur Kursuncu, Amit Sheth

JMIR Public Health Surveill 2022 (Dec 23); 8(12):e24938

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Natural Language Processing and Graph Theory: Making Sense of Imaging Records in a Novel Representation Frame

Laurent Binsfeld Gonçalves, Ivan Nesic, Marko Obradovic, Bram Stieltjes, Thomas Weikert, Jens Bremerich

JMIR Med Inform 2022 (Dec 21); 10(12):e40534

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Telehealth System Based on the Ontology Design of a Diabetes Management Pathway Model in China: Development and Usability Study

ZhiYuan Fan, LiYuan Cui, Ying Ye, ShouCheng Li, Ning Deng

JMIR Med Inform 2022 (Dec 19); 10(12):e42664

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Construction of Cohorts of Similar Patients From Automatic Extraction of Medical Concepts: Phenotype Extraction Study

Christel Gérardin, Arthur Mageau, Arsène Mékinian, Xavier Tannier, Fabrice Carrat

JMIR Med Inform 2022 (Dec 19); 10(12):e42379

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Pan-Canadian Electronic Medical Record Diagnostic and Unstructured Text Data for Capturing PTSD: Retrospective Observational Study

Leanne Kosowan, Alexander Singer, Farhana Zulkernine, Hasan Zafari, Marcello Nesca, Dhasni Muthumuni

JMIR Med Inform 2022 (Dec 13); 10(12):e41312

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Extraction and Quantification of Words Representing Degrees of Diseases: Combining the Fuzzy C-Means Method and Gaussian Membership

Feng Han, ZiHeng Zhang, Hongjian Zhang, Jun Nakaya, Kohsuke Kudo, Katsuhiko Ogasawara

JMIR Form Res 2022 (Nov 18); 6(11):e38677

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Training a Deep Contextualized Language Model for International Classification of Diseases, 10th Revision Classification via Federated Learning: Model Development and Validation Study

Pei-Fu Chen, Tai-Liang He, Sheng-Che Lin, Yuan-Chia Chu, Chen-Tsung Kuo, Feipei Lai, Ssu-Ming Wang, Wan-Xuan Zhu, Kuan-Chih Chen, Lu-Cheng Kuo, Fang-Ming Hung, Yu-Cheng Lin, I-Chang Tsai, Chi-Hao Chiu, Shu-Chih Chang, Chi-Yu Yang

JMIR Med Inform 2022 (Nov 10); 10(11):e41342

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Linking Biomedical Data Warehouse Records With the National Mortality Database in France: Large-scale Matching Algorithm

Vianney Guardiolle, Adrien Bazoge, Emmanuel Morin, Béatrice Daille, Delphine Toublant, Guillaume Bouzillé, Youenn Merel, Morgane Pierre-Jean, Alexandre Filiot, Marc Cuggia, Matthieu Wargny, Antoine Lamer, Pierre-Antoine Gourraud

JMIR Med Inform 2022 (Nov 01); 10(11):e36711

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Evaluating the Impact on Clinical Task Efficiency of a Natural Language Processing Algorithm for Searching Medical Documents: Prospective Crossover Study

Eunsoo H Park, Hannah I Watson, Felicity V Mehendale, Alison Q O'Neil, Clinical Evaluators

JMIR Med Inform 2022 (Oct 26); 10(10):e39616

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Evolving Hybrid Partial Genetic Algorithm Classification Model for Cost-effective Frailty Screening: Investigative Study

John Oates, Niusha Shafiabady, Rachel Ambagtsheer, Justin Beilby, Chris Seiboth, Elsa Dent

JMIR Aging 2022 (Oct 07); 5(4):e38464

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Identifying Caregiver Availability Using Medical Notes With Rule-Based Natural Language Processing: Retrospective Cohort Study

Elham Mahmoudi, Wenbo Wu, Cyrus Najarian, James Aikens, Julie Bynum, V G Vinod Vydiswaran

JMIR Aging 2022 (Sep 22); 5(3):e40241

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Attention-Based Models for Classifying Small Data Sets Using Community-Engaged Research Protocols: Classification System Development and Validation Pilot Study

Brian J Ferrell, Sarah E Raskin, Emily B Zimmerman, David H Timberline, Bridget T McInnes, Alex H Krist

JMIR Form Res 2022 (Sep 06); 6(9):e32460

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Standard Vocabularies to Improve Machine Learning Model Transferability With Electronic Health Record Data: Retrospective Cohort Study Using Health Care–Associated Infection

Amber C Kiser, Karen Eilbeck, Jeffrey P Ferraro, David E Skarda, Matthew H Samore, Brian Bucher

JMIR Med Inform 2022 (Aug 30); 10(8):e39057

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Methodological Issues in Using a Common Data Model of COVID-19 Vaccine Uptake and Important Adverse Events of Interest: Feasibility Study of Data and Connectivity COVID-19 Vaccines Pharmacovigilance in the United Kingdom

Gayathri Delanerolle, Robert Williams, Ana Stipancic, Rachel Byford, Anna Forbes, Ruby S M Tsang, Sneha N Anand, Declan Bradley, Siobhán Murphy, Ashley Akbari, Stuart Bedston, Ronan A Lyons, Rhiannon Owen, Fatemeh Torabi, Jillian Beggs, Antony Chuter, Dominique Balharry, Mark Joy, Aziz Sheikh, F D Richard Hobbs, Simon de Lusignan

JMIR Form Res 2022 (Aug 22); 6(8):e37821

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Deciphering the Diversity of Mental Models in Neurodevelopmental Disorders: Knowledge Graph Representation of Public Data Using Natural Language Processing

Manpreet Kaur, Jeremy Costello, Elyse Willis, Karen Kelm, Marek Z Reformat, Francois V Bolduc

J Med Internet Res 2022 (Aug 05); 24(8):e39888

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A Syntactic Information–Based Classification Model for Medical Literature: Algorithm Development and Validation Study

Wentai Tang, Jian Wang, Hongfei Lin, Di Zhao, Bo Xu, Yijia Zhang, Zhihao Yang

JMIR Med Inform 2022 (Aug 02); 10(8):e37817

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A Personalized Ontology-Based Decision Support System for Complex Chronic Patients: Retrospective Observational Study

Esther Román-Villarán, Celia Alvarez-Romero, Alicia Martínez-García, German Antonio Escobar-Rodríguez, María José García-Lozano, Bosco Barón-Franco, Lourdes Moreno-Gaviño, Jesús Moreno-Conde, José Antonio Rivas-González, Carlos Luis Parra-Calderón

JMIR Form Res 2022 (Aug 02); 6(8):e27990

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Harnessing the Electronic Health Care Record to Optimize Patient Safety in Primary Care: Framework for Evaluating e–Safety-Netting Tools

Georgia Bell Black, Afsana Bhuiya, Claire Friedemann Smith, Yasemin Hirst, Brian David Nicholson

JMIR Med Inform 2022 (Aug 01); 10(8):e35726

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