Ontologies, Classifications, and Coding

Improving Diabetes-Related Biomedical Literature Exploration in the Clinical Decision-making Process via Interactive Classification and Topic Discovery: Methodology Development Study

Adrian Ahne, Guy Fagherazzi, Xavier Tannier, Thomas Czernichow, Francisco Orchard

J Med Internet Res 2022 (Jan 18); 24(1):e27434

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Understanding the Nature of Metadata: Systematic Review

Hannes Ulrich, Ann-Kristin Kock-Schoppenhauer, Noemi Deppenwiese, Robert Gött, Jori Kern, Martin Lablans, Raphael W Majeed, Mark R Stöhr, Jürgen Stausberg, Julian Varghese, Martin Dugas, Josef Ingenerf

J Med Internet Res 2022 (Jan 11); 24(1):e25440

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Enabling Research and Clinical Use of Patient-Generated Health Data (the mindLAMP Platform): Digital Phenotyping Study

Aditya Vaidyam, John Halamka, John Torous

JMIR Mhealth Uhealth 2022 (Jan 07); 10(1):e30557

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Benchmarking Effectiveness and Efficiency of Deep Learning Models for Semantic Textual Similarity in the Clinical Domain: Validation Study

Qingyu Chen, Alex Rankine, Yifan Peng, Elaheh Aghaarabi, Zhiyong Lu

JMIR Med Inform 2021 (Dec 30); 9(12):e27386

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Text Mining of Adverse Events in Clinical Trials: Deep Learning Approach

Daphne Chopard, Matthias S Treder, Padraig Corcoran, Nagheen Ahmed, Claire Johnson, Monica Busse, Irena Spasic

JMIR Med Inform 2021 (Dec 24); 9(12):e28632

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Transformation and Evaluation of the MIMIC Database in the OMOP Common Data Model: Development and Usability Study

Nicolas Paris, Antoine Lamer, Adrien Parrot

JMIR Med Inform 2021 (Dec 14); 9(12):e30970

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Leveraging National Claims and Hospital Big Data: Cohort Study on a Statin-Drug Interaction Use Case

Aurélie Bannay, Mathilde Bories, Pascal Le Corre, Christine Riou, Pierre Lemordant, Pascal Van Hille, Emmanuel Chazard, Xavier Dode, Marc Cuggia, Guillaume Bouzillé

JMIR Med Inform 2021 (Dec 13); 9(12):e29286

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The Utility of Different Data Standards to Document Adverse Drug Event Symptoms and Diagnoses: Mixed Methods Study

Erina Chan, Serena S Small, Maeve E Wickham, Vicki Cheng, Ellen Balka, Corinne M Hohl

J Med Internet Res 2021 (Dec 10); 23(12):e27188

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A BERT-Based Generation Model to Transform Medical Texts to SQL Queries for Electronic Medical Records: Model Development and Validation

Youcheng Pan, Chenghao Wang, Baotian Hu, Yang Xiang, Xiaolong Wang, Qingcai Chen, Junjie Chen, Jingcheng Du

JMIR Med Inform 2021 (Dec 08); 9(12):e32698

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The Collaborative Metadata Repository (CoMetaR) Web App: Quantitative and Qualitative Usability Evaluation

Mark R Stöhr, Andreas Günther, Raphael W Majeed

JMIR Med Inform 2021 (Nov 29); 9(11):e30308

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A Pipeline to Understand Emerging Illness Via Social Media Data Analysis: Case Study on Breast Implant Illness

Vishal Dey, Peter Krasniak, Minh Nguyen, Clara Lee, Xia Ning

JMIR Med Inform 2021 (Nov 29); 9(11):e29768

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A Deep Learning Approach to Refine the Identification of High-Quality Clinical Research Articles From the Biomedical Literature: Protocol for Algorithm Development and Validation

Wael Abdelkader, Tamara Navarro, Rick Parrish, Chris Cotoi, Federico Germini, Lori-Ann Linkins, Alfonso Iorio, R Brian Haynes, Sophia Ananiadou, Lingyang Chu, Cynthia Lokker

JMIR Res Protoc 2021 (Nov 29); 10(11):e29398

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Incorporating Domain Knowledge Into Language Models by Using Graph Convolutional Networks for Assessing Semantic Textual Similarity: Model Development and Performance Comparison

David Chang, Eric Lin, Cynthia Brandt, Richard Andrew Taylor

JMIR Med Inform 2021 (Nov 26); 9(11):e23101

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Introduction of Systematized Nomenclature of Medicine–Clinical Terms Coding Into an Electronic Health Record and Evaluation of its Impact: Qualitative and Quantitative Study

Tanya Pankhurst, Felicity Evison, Jolene Atia, Suzy Gallier, Jamie Coleman, Simon Ball, Deborah McKee, Steven Ryan, Ruth Black

JMIR Med Inform 2021 (Nov 23); 9(11):e29532

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Natural Language Processing and Machine Learning Methods to Characterize Unstructured Patient-Reported Outcomes: Validation Study

Zhaohua Lu, Jin-ah Sim, Jade X Wang, Christopher B Forrest, Kevin R Krull, Deokumar Srivastava, Melissa M Hudson, Leslie L Robison, Justin N Baker, I-Chan Huang

J Med Internet Res 2021 (Nov 03); 23(11):e26777

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Stroke Outcome Measurements From Electronic Medical Records: Cross-sectional Study on the Effectiveness of Neural and Nonneural Classifiers

Bruna Stella Zanotto, Ana Paula Beck da Silva Etges, Avner dal Bosco, Eduardo Gabriel Cortes, Renata Ruschel, Ana Claudia De Souza, Claudio M V Andrade, Felipe Viegas, Sergio Canuto, Washington Luiz, Sheila Ouriques Martins, Renata Vieira, Carisi Polanczyk, Marcos André Gonçalves

JMIR Med Inform 2021 (Nov 01); 9(11):e29120

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Transforming Anesthesia Data Into the Observational Medical Outcomes Partnership Common Data Model: Development and Usability Study

Antoine Lamer, Osama Abou-Arab, Alexandre Bourgeois, Adrien Parrot, Benjamin Popoff, Jean-Baptiste Beuscart, Benoît Tavernier, Mouhamed Djahoum Moussa

J Med Internet Res 2021 (Oct 29); 23(10):e29259

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Developing a RadLex-Based Named Entity Recognition Tool for Mining Textual Radiology Reports: Development and Performance Evaluation Study

Shintaro Tsuji, Andrew Wen, Naoki Takahashi, Hongjian Zhang, Katsuhiko Ogasawara, Gouqian Jiang

J Med Internet Res 2021 (Oct 29); 23(10):e25378

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Common Data Elements for Meaningful Stroke Documentation in Routine Care and Clinical Research: Retrospective Data Analysis

Sarah Berenspöhler, Jens Minnerup, Martin Dugas, Julian Varghese

JMIR Med Inform 2021 (Oct 12); 9(10):e27396

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Expressiveness of an International Semantic Standard for Wound Care: Mapping a Standardized Item Set for Leg Ulcers to the Systematized Nomenclature of Medicine–Clinical Terms

Jens Hüsers, Mareike Przysucha, Moritz Esdar, Swen Malte John, Ursula Hertha Hübner

JMIR Med Inform 2021 (Oct 06); 9(10):e31980

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