Ontologies, Classifications, and Coding

Extraction and Quantification of Words Representing Degrees of Diseases: Combining the Fuzzy C-Means Method and Gaussian Membership

Feng Han, ZiHeng Zhang, Hongjian Zhang, Jun Nakaya, Kohsuke Kudo, Katsuhiko Ogasawara

JMIR Form Res 2022 (Nov 18); 6(11):e38677

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Training a Deep Contextualized Language Model for International Classification of Diseases, 10th Revision Classification via Federated Learning: Model Development and Validation Study

Pei-Fu Chen, Tai-Liang He, Sheng-Che Lin, Yuan-Chia Chu, Chen-Tsung Kuo, Feipei Lai, Ssu-Ming Wang, Wan-Xuan Zhu, Kuan-Chih Chen, Lu-Cheng Kuo, Fang-Ming Hung, Yu-Cheng Lin, I-Chang Tsai, Chi-Hao Chiu, Shu-Chih Chang, Chi-Yu Yang

JMIR Med Inform 2022 (Nov 10); 10(11):e41342

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Linking Biomedical Data Warehouse Records With the National Mortality Database in France: Large-scale Matching Algorithm

Vianney Guardiolle, Adrien Bazoge, Emmanuel Morin, Béatrice Daille, Delphine Toublant, Guillaume Bouzillé, Youenn Merel, Morgane Pierre-Jean, Alexandre Filiot, Marc Cuggia, Matthieu Wargny, Antoine Lamer, Pierre-Antoine Gourraud

JMIR Med Inform 2022 (Nov 01); 10(11):e36711

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Evaluating the Impact on Clinical Task Efficiency of a Natural Language Processing Algorithm for Searching Medical Documents: Prospective Crossover Study

Eunsoo H Park, Hannah I Watson, Felicity V Mehendale, Alison Q O'Neil, Clinical Evaluators

JMIR Med Inform 2022 (Oct 26); 10(10):e39616

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Evolving Hybrid Partial Genetic Algorithm Classification Model for Cost-effective Frailty Screening: Investigative Study

John Oates, Niusha Shafiabady, Rachel Ambagtsheer, Justin Beilby, Chris Seiboth, Elsa Dent

JMIR Aging 2022 (Oct 07); 5(4):e38464

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Identifying Caregiver Availability Using Medical Notes With Rule-Based Natural Language Processing: Retrospective Cohort Study

Elham Mahmoudi, Wenbo Wu, Cyrus Najarian, James Aikens, Julie Bynum, V G Vinod Vydiswaran

JMIR Aging 2022 (Sep 22); 5(3):e40241

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Attention-Based Models for Classifying Small Data Sets Using Community-Engaged Research Protocols: Classification System Development and Validation Pilot Study

Brian J Ferrell, Sarah E Raskin, Emily B Zimmerman, David H Timberline, Bridget T McInnes, Alex H Krist

JMIR Form Res 2022 (Sep 06); 6(9):e32460

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Standard Vocabularies to Improve Machine Learning Model Transferability With Electronic Health Record Data: Retrospective Cohort Study Using Health Care–Associated Infection

Amber C Kiser, Karen Eilbeck, Jeffrey P Ferraro, David E Skarda, Matthew H Samore, Brian Bucher

JMIR Med Inform 2022 (Aug 30); 10(8):e39057

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Methodological Issues in Using a Common Data Model of COVID-19 Vaccine Uptake and Important Adverse Events of Interest: Feasibility Study of Data and Connectivity COVID-19 Vaccines Pharmacovigilance in the United Kingdom

Gayathri Delanerolle, Robert Williams, Ana Stipancic, Rachel Byford, Anna Forbes, Ruby S M Tsang, Sneha N Anand, Declan Bradley, Siobhán Murphy, Ashley Akbari, Stuart Bedston, Ronan A Lyons, Rhiannon Owen, Fatemeh Torabi, Jillian Beggs, Antony Chuter, Dominique Balharry, Mark Joy, Aziz Sheikh, F D Richard Hobbs, Simon de Lusignan

JMIR Form Res 2022 (Aug 22); 6(8):e37821

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Deciphering the Diversity of Mental Models in Neurodevelopmental Disorders: Knowledge Graph Representation of Public Data Using Natural Language Processing

Manpreet Kaur, Jeremy Costello, Elyse Willis, Karen Kelm, Marek Z Reformat, Francois V Bolduc

J Med Internet Res 2022 (Aug 05); 24(8):e39888

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A Syntactic Information–Based Classification Model for Medical Literature: Algorithm Development and Validation Study

Wentai Tang, Jian Wang, Hongfei Lin, Di Zhao, Bo Xu, Yijia Zhang, Zhihao Yang

JMIR Med Inform 2022 (Aug 02); 10(8):e37817

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A Personalized Ontology-Based Decision Support System for Complex Chronic Patients: Retrospective Observational Study

Esther Román-Villarán, Celia Alvarez-Romero, Alicia Martínez-García, German Antonio Escobar-Rodríguez, María José García-Lozano, Bosco Barón-Franco, Lourdes Moreno-Gaviño, Jesús Moreno-Conde, José Antonio Rivas-González, Carlos Luis Parra-Calderón

JMIR Form Res 2022 (Aug 02); 6(8):e27990

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Harnessing the Electronic Health Care Record to Optimize Patient Safety in Primary Care: Framework for Evaluating e–Safety-Netting Tools

Georgia Bell Black, Afsana Bhuiya, Claire Friedemann Smith, Yasemin Hirst, Brian David Nicholson

JMIR Med Inform 2022 (Aug 01); 10(8):e35726

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Automatic International Classification of Diseases Coding System: Deep Contextualized Language Model With Rule-Based Approaches

Pei-Fu Chen, Kuan-Chih Chen, Wei-Chih Liao, Feipei Lai, Tai-Liang He, Sheng-Che Lin, Wei-Jen Chen, Chi-Yu Yang, Yu-Cheng Lin, I-Chang Tsai, Chi-Hao Chiu, Shu-Chih Chang, Fang-Ming Hung

JMIR Med Inform 2022 (Jun 29); 10(6):e37557

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Personalized Recommendations for Physical Activity e-Coaching (OntoRecoModel): Ontological Modeling

Ayan Chatterjee, Andreas Prinz

JMIR Med Inform 2022 (Jun 23); 10(6):e33847

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Differential Expression of Long Noncoding RNAs in Murine Myoblasts After Short Hairpin RNA-Mediated Dysferlin Silencing In Vitro: Microarray Profiling

Richa Singhal, Rachel Lukose, Gwenyth Carr, Afsoon Moktar, Ana Lucia Gonzales-Urday, Eric C Rouchka, Bathri N Vajravelu

JMIR Bioinform Biotech 2022 (Jun 17); 3(1):e33186

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Deep Phenotyping of Chinese Electronic Health Records by Recognizing Linguistic Patterns of Phenotypic Narratives With a Sequence Motif Discovery Tool: Algorithm Development and Validation

Shicheng Li, Lizong Deng, Xu Zhang, Luming Chen, Tao Yang, Yifan Qi, Taijiao Jiang

J Med Internet Res 2022 (Jun 03); 24(6):e37213

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The Architecture of a Feasibility Query Portal for Distributed COVID-19 Fast Healthcare Interoperability Resources (FHIR) Patient Data Repositories: Design and Implementation Study

Julian Gruendner, Noemi Deppenwiese, Michael Folz, Thomas Köhler, Björn Kroll, Hans-Ulrich Prokosch, Lorenz Rosenau, Mathias Rühle, Marc-Anton Scheidl, Christina Schüttler, Brita Sedlmayr, Alexander Twrdik, Alexander Kiel, Raphael W Majeed

JMIR Med Inform 2022 (May 25); 10(5):e36709

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Domain-Specific Common Data Elements for Rare Disease Registration: Conceptual Approach of a European Joint Initiative Toward Semantic Interoperability in Rare Disease Research

Haitham Abaza, Dennis Kadioglu, Simona Martin, Andri Papadopoulou, Bruna dos Santos Vieira, Franz Schaefer, Holger Storf

JMIR Med Inform 2022 (May 20); 10(5):e32158

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Generation of a Fast Healthcare Interoperability Resources (FHIR)-based Ontology for Federated Feasibility Queries in the Context of COVID-19: Feasibility Study

Lorenz Rosenau, Raphael W Majeed, Josef Ingenerf, Alexander Kiel, Björn Kroll, Thomas Köhler, Hans-Ulrich Prokosch, Julian Gruendner

JMIR Med Inform 2022 (Apr 27); 10(4):e35789

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