Ontologies, Classifications, and Coding

Language Models for Multilabel Document Classification of Surgical Concepts in Exploratory Laparotomy Operative Notes: Algorithm Development Study

Jeremy A Balch, Sasank S Desaraju, Victoria J Nolan, Divya Vellanki, Timothy R Buchanan, Lindsey M Brinkley, Yordan Penev, Ahmet Bilgili, Aashay Patel, Corinne E Chatham, David M Vanderbilt, Rayon Uddin, Azra Bihorac, Philip Efron, Tyler J Loftus, Protiva Rahman, Benjamin Shickel

JMIR Med Inform 2025 (Jul 09); 13:e71176

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Developing a SNOMED CT–Based Value Set to Document Symptoms and Diagnoses for Adverse Drug Events: Mixed Methods Study

Erica Y Lau, Linda Bird, Anthony Lau, Yau-Lam Alex Chau, Katherine Butcher, Susan Buchkowsky, Kira Gossack-Keenan, Cheryl Sadowski, Corinne M Hohl

JMIR Med Inform 2025 (Jul 08); 13:e70167

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Artificial Intelligence to Improve Clinical Coding Practice in Scandinavia: Crossover Randomized Controlled Trial

Taridzo Chomutare, Therese Olsen Svenning, Miguel Ángel Tejedor Hernández, Phuong Dinh Ngo, Andrius Budrionis, Kaisa Markljung, Lill Irene Hind, Torbjørn Torsvik, Karl Øyvind Mikalsen, Aleksandar Babic, Hercules Dalianis

J Med Internet Res 2025 (Jul 03); 27:e71904

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Enhancing the Predictions of Cytomegalovirus Infection in Severe Ulcerative Colitis Using a Deep Learning Ensemble Model: Development and Validation Study

Jeong Heon Kim, A Reum Choe, Ju Ran Byeon, Yehyun Park, Eun Mi Song, Seong-Eun Kim, Eui Sun Jeong, Rena Lee, Jin Sung Kim, So Hyun Ahn, Sung Ae Jung

JMIR Med Inform 2025 (Jul 01); 13:e64987

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Performance of ChatGPT-4o and Four Open-Source Large Language Models in Generating Diagnoses Based on China’s Rare Disease Catalog: Comparative Study

Wei Zhong, YiFan Liu, Yan Liu, Kai Yang, HuiMin Gao, HuiHui Yan, WenJing Hao, YouSheng Yan, ChengHong Yin

J Med Internet Res 2025 (Jun 18); 27:e69929

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Detecting Redundant Health Survey Questions by Using Language-Agnostic Bidirectional Encoder Representations From Transformers Sentence Embedding: Algorithm Development Study

Sunghoon Kang, Hyewon Park, Ricky Taira, Hyeoneui Kim

JMIR Med Inform 2025 (Jun 10); 13:e71687

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Integrating CEN ISO/TS 82304-2 in the Catalan Health App Assessment Framework: Comparative Case Study

Berta Llebot Casajuana, Petra Hoogendoorn, Maria Villalobos-Quesada, Carme Pratdepàdua Bufill

JMIR Mhealth Uhealth 2025 (Jun 04); 13:e67858

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Enhancing the Accuracy of Human Phenotype Ontology Identification: Comparative Evaluation of Multimodal Large Language Models

Wei Zhong, Mingyue Sun, Shun Yao, YiFan Liu, Dingchuan Peng, Yan Liu, Kai Yang, HuiMin Gao, HuiHui Yan, WenJing Hao, YouSheng Yan, ChengHong Yin

J Med Internet Res 2025 (Jun 02); 27:e73233

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Application of the Bidirectional Encoder Representations from Transformers Model for Predicting the Abbreviated Injury Scale in Patients with Trauma: Algorithm Development and Validation Study

Jun Tang, Yang Li, Keyu Luo, Jiangyuan Lai, Xiang Yin, Dongdong Wu

JMIR Form Res 2025 (May 29); 9:e67311

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Toward a Domain-Overarching Metadata Schema for Making Health Research Studies FAIR (Findable, Accessible, Interoperable, and Reusable): Development of the NFDI4Health Metadata Schema

Haitham Abaza, Aliaksandra Shutsko, Sophie A I Klopfenstein, Carina N Vorisek, Carsten Oliver Schmidt, Claudia Brünings-Kuppe, Vera Clemens, Johannes Darms, Sabine Hanß, Timm Intemann, Franziska Jannasch, Elisa Kasbohm, Birte Lindstädt, Matthias Löbe, Katharina Nimptsch, Ute Nöthlings, Marisabel Gonzalez Ocanto, Tracy Bonsu Osei, Ines Perrar, Manuela Peters, Tobias Pischon, Ulrich Sax, Matthias B Schulze, Florian Schwarz, Carolina Schwedhelm, Sylvia Thun, Dagmar Waltemath, Atinkut A Zeleke, Wolfgang Müller, Martin Golebiewski

JMIR Med Inform 2025 (May 21); 13:e63906

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Breaking Digital Health Barriers Through a Large Language Model–Based Tool for Automated Observational Medical Outcomes Partnership Mapping: Development and Validation Study

Meredith CB Adams, Matthew L Perkins, Cody Hudson, Vithal Madhira, Oguz Akbilgic, Da Ma, Robert W Hurley, Umit Topaloglu

J Med Internet Res 2025 (May 15); 27:e69004

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Pragmatic Risk Stratification Method to Identify Emergency Department Presentations for Alternative Care Service Pathways: Registry-Based Retrospective Study Over 5 Years

John Rong Hao Tay, Yohei Okada, Gayathri Devi Nadarajan, Fahad Javaid Siddiqui, Tomás Barry, Marcus Eng Hock Ong

J Med Internet Res 2025 (May 12); 27:e73758

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Toward Interoperable Digital Medication Records on Fast Healthcare Interoperability Resources: Development and Technical Validation of a Minimal Core Dataset

Eduardo Salgado-Baez, Raphael Heidepriem, Renate Delucchi Danhier, Eugenia Rinaldi, Vishnu Ravi, Akira-Sebastian Poncette, Iris Dahlhaus, Daniel Fürstenau, Felix Balzer, Sylvia Thun, Julian Sass

JMIR Med Inform 2025 (May 09); 13:e64099

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Enhancing Interoperability for a Sustainable, Patient-Centric Health Care Value Chain: Systematic Review for Taxonomy Development

Carlos Antonio Marino, Claudia Diaz Paz

J Med Internet Res 2025 (Apr 25); 27:e69465

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Real-Time, Risk-Based Clinical Trial Quality Management in China: Development of a Digital Monitoring Platform

Min Jiang, Shuhua Zhao, Yun Mei, Zhiying Fu, Yannan Yuan, Jie Ai, Yuan Sheng, Ying Gong, Jingjing Chen

JMIR Med Inform 2025 (Apr 25); 13:e64114

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Integrating Health Care Data in an Informatics for Integrating Biology & the Bedside (i2b2) Model Persisted Through Elasticsearch: Design, Implementation, and Evaluation in a French University Hospital

Romain Griffier, Fleur Mougin, Vianney Jouhet

JMIR Med Inform 2025 (Apr 24); 13:e65753

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Ensuring General Data Protection Regulation Compliance and Security in a Clinical Data Warehouse From a University Hospital: Implementation Study

Christine Riou, Mohamed El Azzouzi, Anne Hespel, Emeric Guillou, Gouenou Coatrieux, Marc Cuggia

JMIR Med Inform 2025 (Apr 17); 13:e63754

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Identification of Patients With Congestive Heart Failure From the Electronic Health Records of Two Hospitals: Retrospective Study

Daniel Sumsion, Elijah Davis, Marta Fernandes, Ruoqi Wei, Rebecca Milde, Jet Malou Veltink, Wan-Yee Kong, Yiwen Xiong, Samvrit Rao, Tara Westover, Lydia Petersen, Niels Turley, Arjun Singh, Stephanie Buss, Shibani Mukerji, Sahar Zafar, Sudeshna Das, Valdery Moura Junior, Manohar Ghanta, Aditya Gupta, Jennifer Kim, Katie Stone, Emmanuel Mignot, Dennis Hwang, Lynn Marie Trotti, Gari D Clifford, Umakanth Katwa, Robert Thomas, M Brandon Westover, Haoqi Sun

JMIR Med Inform 2025 (Apr 10); 13:e64113

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Improving Phenotyping of Patients With Immune-Mediated Inflammatory Diseases Through Automated Processing of Discharge Summaries: Multicenter Cohort Study

Adam Remaki, Jacques Ung, Pierre Pages, Perceval Wajsburt, Elise Liu, Guillaume Faure, Thomas Petit-Jean, Xavier Tannier, Christel Gérardin

JMIR Med Inform 2025 (Apr 09); 13:e68704

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Conversion of Sensitive Data to the Observational Medical Outcomes Partnership Common Data Model: Protocol for the Development and Use of Carrot

Samuel Cox, Erum Masood, Vasiliki Panagi, Calum Macdonald, Gordon Milligan, Scott Horban, Roberto Santos, Chris Hall, Daniel Lea, Simon Tarr, Shahzad Mumtaz, Emeka Akashili, Andy Rae, Esmond Urwin, Christian Cole, Aziz Sheikh, Emily Jefferson, Philip Roy Quinlan

JMIR Res Protoc 2025 (Apr 02); 14:e60917

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