JMIR Medical Informatics

Clinical informatics, decision support for health professionals, electronic health records, and eHealth infrastructures.

Editor-in-Chief:

Arriel Benis, PhD, FIAHSI, Associate Professor and Head of the Department of Digital Medical Technologies, Holon Institute of Technology (HIT), Israel


Impact Factor 3.8 CiteScore 7.7

JMIR Medical Informatics (JMI, ISSN 2291-9694, Journal Impact Factor 3.8) (Editor-in-chief: Arriel Benis, PhD, FIAHSI) is an open-access journal that focuses on the challenges and impacts of clinical informatics, digitalization of care processes, clinical and health data pipelines from acquisition to reuse, including semantics, natural language processing, natural interactions, meaningful analytics and decision support, electronic health records, infrastructures, implementation, and evaluation (see Focus and Scope).

JMIR Medical Informatics adheres to rigorous quality standards, involving a rapid and thorough peer-review process, professional copyediting, and professional production of PDF, XHTML, and XML proofs.

The journal is indexed in MEDLINEPubMedPubMed CentralDOAJ, Scopus, and the Science Citation Index Expanded (SCIE)

JMIR Medical Informatics received a Journal Impact Factor of 3.8 (Source:Journal Citation Reports 2025 from Clarivate).

JMIR Medical Informatics received a Scopus CiteScore of 7.7 (2024), placing it in the 79th percentile (#32 of 153) as a Q1 journal in the field of Health Informatics.

Recent Articles

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Reviews in Medical Informatics

Over the last decade, natural language processing (NLP) has provided various solutions for information extraction (IE) from textual clinical data. In recent years, the use of NLP in cancer research has gained considerable attention, with numerous studies exploring the effectiveness of various NLP techniques for identifying and extracting cancer-related entities from clinical text data.

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Methods and Instruments in Medical Informatics

Millions of people affected with complex medical conditions with diverse symptoms often turn to online discourse to share their experiences. While some studies have explored natural language processing methods and medical information extraction tools, these typically focus on generic symptoms in clinical notes and struggle to identify patient-reported, disease-specific, subtle symptoms from online health discourse.

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Computer-Aided Diagnosis

Diseases of the oral cavity, including oral squamous cell carcinoma (OSCC) pose major challenges to healthcare worldwide due to its late diagnosis and complicated differentiation of oral tissues. The combination of endoscopic Hyperspectral Imaging (eHSI) and Deep Learning (DL) models offer a promising approach to the demand for modern, non-invasive tissue diagnostics. This study presents a large-scale in vivo dataset designed to support DL–based segmentation and classification of healthy oral tissues.

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Decision Support for Health Professionals

Total knee and hip arthroplasty (TKA and THA) are among the most performed elective procedures. Rising demand and the resources intensive nature of these procedures has contributed to longer wait times despite significant healthcare investment. Current scheduling methods often rely on average surgical durations, overlooking patient-specific variability.

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Methods and Instruments in Medical Informatics

Despite the Coronary Artery Reporting and Data System (CAD-RADS) providing a standardized approach, radiologists continue to favor free-text reports. This preference creates significant challenges for data extraction and analysis in longitudinal studies, potentially limiting large-scale research and quality assessment initiatives.

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Ontologies, Classifications, and Coding

Cirrhosis is a leading cause of non-cancer deaths in gastrointestinal diseases, resulting in high hospitalization and readmission rates. Early identification of high-risk patients is vital for proactive interventions and improve healthcare outcomes. However, the quality and integrity of real-world Electronic Health Records (EHRs) limited their utility in developing risk assessment tools.

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Implementation Report

Artificial intelligence (AI) algorithms offer an effective solution to alleviate the burden of diabetic retinopathy (DR) screening in public health settings. However, there are challenges in translating diagnostic performance and its application when deployed in real-world conditions.

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Tools, Programs and Algorithms

Primary liver cancer, particularly hepatocellular carcinoma (HCC), poses significant clinical challenges due to late-stage diagnosis, tumor heterogeneity, and rapidly evolving therapeutic strategies. While systematic reviews and meta-analyses are essential for updating clinical guidelines, their labor-intensive nature limits timely evidence synthesis.

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Natural Language Processing

Transportation insecurity is a known barrier to accessing eye care and is associated with worse visual outcomes. However, it is infrequently captured in structured electronic health record (EHR) fields, limiting efforts to identify and support affected patients. Free-text clinical documentation may contain valuable information about transportation-related challenges that structured data miss.

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Case Study

Deep learning has demonstrated significant potential in advancing computer-aided diagnosis for neuropsychiatric disorders, such as migraine, enabling patient-specific diagnosis at an individual level. However, despite the superior accuracy of deep learning models, the interpretability of image classification models remains limited. Their black-box nature continues to pose a major obstacle in clinical applications, hindering biomarker discovery and personalized treatment.

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Adoption and Change Management of eHealth Systems

The primary healthcare service in Indonesia consists of 10,260 Public Health Centres (Puskesmas), which play a major role in providing health care in the community, recording and reporting health data, using digital Health Information Systems (HIS) and/or manual reports. The utilisation of HIS across Puskesmas is crucial to capture the dynamic evolution of health problems and monitor interventions, thus providing effective primary healthcare services for the community. The primary healthcare service in Indonesia consists of 10,260 Public Health Centres (Puskesmas), which play a major role in providing health care in the community, recording and reporting health data, using digital Health Information Systems (HIS) and/or manual reports. The utilisation of HIS across Puskesmas is crucial to capture the dynamic evolution of health problems and monitor interventions, thus providing effective primary healthcare services for the community.

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Viewpoints on and Experiences with Digital Technologies in Health

In an era where healthcare is increasingly dependent on digital infrastructure, the resilience of health information technology (IT) systems has become a cornerstone of patient safety and operational continuity. As cyber threats grow in frequency and sophistication, healthcare organizations have turned to advanced cybersecurity tools to safeguard their systems. Yet even the most robust defenses can falter. On July 19, 2024, a routine update from a widely used cybersecurity platform triggered a widespread IT disruption. A flawed sensor configuration led to 8,647 “blue screen of death” (BSOD) events, with 729 devices requiring manual remediation. What unfolded was not just a technical crisis, but a test of organizational agility, collaboration, and resilience. This viewpoint traces the response to that disruption, highlighting the pivotal role of clinical informaticists (CI) and the coordinated efforts that enabled a rapid recovery. From the formation of an incident response team to the triage and mitigation of impacted systems, the response was swift and strategic. Clinical informaticists emerged as key players, bridging the gap between technical teams and frontline care providers. They identified workflow disruptions, facilitated communication, and ensured that patient care remained as uninterrupted as possible. Despite the scale of the outage, operations continued with minimal disruption—thanks to early recognition, decisive action, and cross-disciplinary collaboration. This incident underscored the importance of a well-practiced response plan, clear communication channels, and the integration of clinical expertise in technical recovery efforts. As we reflect on this event, several lessons emerge: the need for continuous refinement of incident response strategies, the value of regular training exercises, and the critical role of clinical informatics in navigating digital crises. This paper calls for a renewed commitment to building resilient health IT ecosystems—ones that can withstand disruption and continue to support the delivery of safe, effective care.

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Preprints Open for Peer-Review

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Open Peer Review Period:

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