Published on in Vol 7, No 2 (2019): Apr-Jun
Preprints (earlier versions) of this paper are
available at
https://preprints.jmir.org/preprint/12596, first published
.
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- Köhler S, Gargano M, Matentzoglu N, Carmody L, Lewis-Smith D, Vasilevsky N, Danis D, Balagura G, Baynam G, Brower A, Callahan T, Chute C, Est J, Galer P, Ganesan S, Griese M, Haimel M, Pazmandi J, Hanauer M, Harris N, Hartnett M, Hastreiter M, Hauck F, He Y, Jeske T, Kearney H, Kindle G, Klein C, Knoflach K, Krause R, Lagorce D, McMurry J, Miller J, Munoz-Torres M, Peters R, Rapp C, Rath A, Rind S, Rosenberg A, Segal M, Seidel M, Smedley D, Talmy T, Thomas Y, Wiafe S, Xian J, Yüksel Z, Helbig I, Mungall C, Haendel M, Robinson P. The Human Phenotype Ontology in 2021. Nucleic Acids Research 2021;49(D1):D1207 View
- Haimel M, Pazmandi J, Heredia R, Dmytrus J, Bal S, Zoghi S, van Daele P, Briggs T, Wouters C, Bader-Meunier B, Aeschlimann F, Caorsi R, Eleftheriou D, Hoppenreijs E, Salzer E, Bakhtiar S, Derfalvi B, Saettini F, Kusters M, Elfeky R, Trück J, Rivière J, van der Burg M, Gattorno M, Seidel M, Burns S, Warnatz K, Hauck F, Brogan P, Gilmour K, Schuetz C, Simon A, Bock C, Hambleton S, de Vries E, Robinson P, van Gijn M, Boztug K. Curation and expansion of Human Phenotype Ontology for defined groups of inborn errors of immunity. Journal of Allergy and Clinical Immunology 2022;149(1):369 View
- Landolsi M, Hlaoua L, Romdhane L. Hybrid method to automatically extract medical document tree structure. Engineering Applications of Artificial Intelligence 2023;120:105922 View
- Skreta M, Arbabi A, Wang J, Drysdale E, Kelly J, Singh D, Brudno M. Automatically disambiguating medical acronyms with ontology-aware deep learning. Nature Communications 2021;12(1) View
- Zhang J, Bolanos Trujillo L, Tanwar A, Ive J, Gupta V, Guo Y. Clinical utility of automatic phenotype annotation in unstructured clinical notes: intensive care unit use. BMJ Health & Care Informatics 2022;29(1):e100519 View
- Lenivtceva I, Kopanitsa G. The Pipeline for Standardizing Russian Unstructured Allergy Anamnesis Using FHIR AllergyIntolerance Resource. Methods of Information in Medicine 2021;60(03/04):095 View
- Azizi S, Hier D, Wunsch II D. Enhanced neurologic concept recognition using a named entity recognition model based on transformers. Frontiers in Digital Health 2022;4 View
- Landolsi M, Hlaoua L, Ben Romdhane L. Information extraction from electronic medical documents: state of the art and future research directions. Knowledge and Information Systems 2023;65(2):463 View
- Filice R, Kahn C. Biomedical Ontologies to Guide AI Development in Radiology. Journal of Digital Imaging 2021;34(6):1331 View
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- Feng Y, Qi L, Tian W. PhenoBERT: A Combined Deep Learning Method for Automated Recognition of Human Phenotype Ontology. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2023;20(2):1269 View
- Stinton G, Lieviant J, Kam S, Lim J, Goh J, Lim W, Baynam G, Tan T, Pham D, Jamuar S. Clinical free text to HPO codes. Rare 2023;1:100007 View
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- O’Leary M. Translational Bioinformatics for Therapeutic Development. View
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