Published on in Vol 6, No 4 (2018): Oct-Dec

Preprints (earlier versions) of this paper are available at https://preprints.jmir.org/preprint/12159, first published .
Extraction of Information Related to Adverse Drug Events from Electronic Health Record Notes: Design of an End-to-End Model Based on Deep Learning

Extraction of Information Related to Adverse Drug Events from Electronic Health Record Notes: Design of an End-to-End Model Based on Deep Learning

Extraction of Information Related to Adverse Drug Events from Electronic Health Record Notes: Design of an End-to-End Model Based on Deep Learning

Journals

  1. Basile A, Yahi A, Tatonetti N. Artificial Intelligence for Drug Toxicity and Safety. Trends in Pharmacological Sciences 2019;40(9):624 View
  2. Wu S, Roberts K, Datta S, Du J, Ji Z, Si Y, Soni S, Wang Q, Wei Q, Xiang Y, Zhao B, Xu H. Deep learning in clinical natural language processing: a methodical review. Journal of the American Medical Informatics Association 2020;27(3):457 View
  3. Wang J, Deng H, Liu B, Hu A, Liang J, Fan L, Zheng X, Wang T, Lei J. Systematic Evaluation of Research Progress on Natural Language Processing in Medicine Over the Past 20 Years: Bibliometric Study on PubMed. Journal of Medical Internet Research 2020;22(1):e16816 View
  4. Dandala B, Joopudi V, Tsou C, Liang J, Suryanarayanan P. Extraction of Information Related to Drug Safety Surveillance From Electronic Health Record Notes: Joint Modeling of Entities and Relations Using Knowledge-Aware Neural Attentive Models. JMIR Medical Informatics 2020;8(7):e18417 View
  5. Chen T, Wu M, Li H. A general approach for improving deep learning-based medical relation extraction using a pre-trained model and fine-tuning. Database 2019;2019 View
  6. Issa N, Stathias V, Schürer S, Dakshanamurthy S. Machine and deep learning approaches for cancer drug repurposing. Seminars in Cancer Biology 2021;68:132 View
  7. Chen J, Lalor J, Liu W, Druhl E, Granillo E, Vimalananda V, Yu H. Detecting Hypoglycemia Incidents Reported in Patients’ Secure Messages: Using Cost-Sensitive Learning and Oversampling to Reduce Data Imbalance. Journal of Medical Internet Research 2019;21(3):e11990 View
  8. Tobore I, Li J, Yuhang L, Al-Handarish Y, Kandwal A, Nie Z, Wang L. Deep Learning Intervention for Health Care Challenges: Some Biomedical Domain Considerations. JMIR mHealth and uHealth 2019;7(8):e11966 View
  9. Christopoulou F, Tran T, Sahu S, Miwa M, Ananiadou S. Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods. Journal of the American Medical Informatics Association 2020;27(1):39 View
  10. Ju M, Nguyen N, Miwa M, Ananiadou S. An ensemble of neural models for nested adverse drug events and medication extraction with subwords. Journal of the American Medical Informatics Association 2020;27(1):22 View
  11. Ujiie S, Yada S, Wakamiya S, Aramaki E. Identification of Adverse Drug Event–Related Japanese Articles: Natural Language Processing Analysis. JMIR Medical Informatics 2020;8(11):e22661 View
  12. Decker B, Hill C, Baldassano S, Khankhanian P. Can antiepileptic efficacy and epilepsy variables be studied from electronic health records? A review of current approaches. Seizure 2021;85:138 View
  13. Gupta S, Belouali A, Shah N, Atkins M, Madhavan S. Automated Identification of Patients With Immune-Related Adverse Events From Clinical Notes Using Word Embedding and Machine Learning. JCO Clinical Cancer Informatics 2021;(5):541 View
  14. Mitra A, Rawat B, McManus D, Yu H. Relation Classification for Bleeding Events From Electronic Health Records Using Deep Learning Systems: An Empirical Study. JMIR Medical Informatics 2021;9(7):e27527 View
  15. Bright R, Rankin S, Dowdy K, Blok S, Bright S, Palmer L. Finding Potential Adverse Events in the Unstructured Text of Electronic Health Care Records: Development of the Shakespeare Method. JMIRx Med 2021;2(3):e27017 View
  16. Salas M, Petracek J, Yalamanchili P, Aimer O, Kasthuril D, Dhingra S, Junaid T, Bostic T. The Use of Artificial Intelligence in Pharmacovigilance: A Systematic Review of the Literature. Pharmaceutical Medicine 2022;36(5):295 View
  17. Harrison J, Gilbertson J, Hanna M, Olson N, Seheult J, Sorace J, Stram M. Introduction to Artificial Intelligence and Machine Learning for Pathology. Archives of Pathology & Laboratory Medicine 2021;145(10):1228 View
  18. Xia L. Historical profile will tell? A deep learning-based multi-level embedding framework for adverse drug event detection and extraction. Decision Support Systems 2022;160:113832 View
  19. Wieder R, Adam N. Drug repositioning for cancer in the era of AI, big omics, and real-world data. Critical Reviews in Oncology/Hematology 2022;175:103730 View
  20. Gharagozloo M, Amrani A, Wittingstall K, Hamilton-Wright A, Gris D. Machine Learning in Modeling of Mouse Behavior. Frontiers in Neuroscience 2021;15 View
  21. Luo X, Gandhi P, Storey S, Huang K. A Deep Language Model for Symptom Extraction From Clinical Text and its Application to Extract COVID-19 Symptoms From Social Media. IEEE Journal of Biomedical and Health Informatics 2022;26(4):1737 View
  22. Ramachandran G, Lybarger K, Liu Y, Mahajan D, Liang J, Tsou C, Yetisgen M, Uzuner Ö. Extracting medication changes in clinical narratives using pre-trained language models. Journal of Biomedical Informatics 2023;139:104302 View
  23. Trajanov D, Trajkovski V, Dimitrieva M, Dobreva J, Jovanovik M, Klemen M, Žagar A, Robnik-Šikonja M, Khoshbouei H. Review of Natural Language Processing in Pharmacology. Pharmacological Reviews 2023;75(4):714 View
  24. Deimazar G, Sheikhtaheri A. Machine learning models to detect and predict patient safety events using electronic health records: A systematic review. International Journal of Medical Informatics 2023;180:105246 View
  25. Botsis T, Kreimeyer K. Improving drug safety with adverse event detection using natural language processing. Expert Opinion on Drug Safety 2023;22(8):659 View
  26. Fraile Navarro D, Ijaz K, Rezazadegan D, Rahimi-Ardabili H, Dras M, Coiera E, Berkovsky S. Clinical named entity recognition and relation extraction using natural language processing of medical free text: A systematic review. International Journal of Medical Informatics 2023;177:105122 View
  27. Li D, Ma H, Li W, Zhao B, Zhao J, Liu Y, Fu J. KTI-RNN: Recognition of Heart Failure from Clinical Notes. Tsinghua Science and Technology 2023;28(1):117 View
  28. Modi S, Kasmiran K, Mohd Sharef N, Sharum M. Extracting adverse drug events from clinical Notes: A systematic review of approaches used. Journal of Biomedical Informatics 2024;151:104603 View
  29. Li Y, Tao W, Li Z, Sun Z, Li F, Fenton S, Xu H, Tao C. Artificial intelligence-powered pharmacovigilance: A review of machine and deep learning in clinical text-based adverse drug event detection for benchmark datasets. Journal of Biomedical Informatics 2024;152:104621 View
  30. Abedian Kalkhoran H, Zwaveling J, van Hunsel F, Kant A. An innovative method to strengthen evidence for potential drug safety signals using Electronic Health Records. Journal of Medical Systems 2024;48(1) View

Books/Policy Documents

  1. Shinozaki A. Artificial Intelligence in Oncology Drug Discovery and Development. View
  2. Dumitriu A, Molony C, Daluwatte C. Provenance in Data Science. View
  3. Motulsky A, Nikiema J, Bosson-Rieutort D. Multiple Perspectives on Artificial Intelligence in Healthcare. View
  4. Aghaebrahimian A, Anisimova M, Gil M. Text, Speech, and Dialogue. View